Publications

MALDI-TOF MS spectra database from a Spanish University General Hospital (2018-2024)

Accepted for publication in Scientific Data, 2026

MARISMa: an open MALDI-TOF MS resource. Last-author paper accepted for publication in Scientific Data; final publication details forthcoming.

Recommended citation: Santiago, L. S., López-Mareca, I., Blázquez-Sánchez, M., Moreno, J. M., Sevilla-Salcedo, C., Gómez-Verdejo, V., Rodríguez-Sánchez, B., Rodríguez-Temporal, D., & Guerrero-López, A. (2026). MALDI-TOF MS spectra database from a Spanish University General Hospital (2018-2024). Scientific Data. Accepted for publication.

A model for the automatic phonemic grouping of Parkinsonian speech

Accepted for publication in Engineering Applications of Artificial Intelligence, 2026

MARTA, developed during my postdoctoral research at UPM. First-author paper accepted in Engineering Applications of Artificial Intelligence; final publication details forthcoming.

Recommended citation: Guerrero-López, A., Arias-Londoño, J. D., Shattuck-Hufnagel, S., & Godino-Llorente, J. I. (2026). A model for the automatic phonemic grouping of Parkinsonian speech. Engineering Applications of Artificial Intelligence. Accepted for publication.

State-of-the-art in automated image-based species identification systems

Accepted for publication in Frontiers in Cellular and Infection Microbiology, 2026 · Review article

Review article (Mini Review) on AI-based analysis of culture-plate images for microbial identification and laboratory workflows. Accepted 7 September 2026; the final formatted article is forthcoming.

Recommended citation: Weber, L., Hussen, M. M., Veeraraghavan, B., Meijer, E., Gütlin, Y., Guerrero-López, A., Brüningk, S., Nolte, O., Jutzeler, C., & Egli, A. (2026). State-of-the-art in automated image-based species identification systems. Frontiers in Cellular and Infection Microbiology. Mini Review, accepted for publication. https://doi.org/10.3389/fcimb.2026.1818023

A systematic review of machine learning on clinical MALDI-TOF MS

Published in Briefings in Bioinformatics, 2026

Recommended citation: Schmidt-Santiago, L., Guerrero-López, A., Sevilla-Salcedo, C., Rodríguez-Temporal, D., Rodríguez-Sánchez, B., & Gómez-Verdejo, V. (2026). A systematic review of machine learning on clinical MALDI-TOF MS. Briefings in Bioinformatics, 27(3), bbag208. https://doi.org/10.1093/bib/bbag208

How ready are we to use artificial intelligence in our fight against antimicrobial resistance? An ESGAID and EAAS perspective

Published in Expert Review of Anti-infective Therapy, 2026 · Perspective

Published perspective from ESGAID and EAAS on AI for antimicrobial resistance. Last individual author.

Recommended citation: Giacobbe, D. R., Ahmad, R., Akilli, F. M., Ascandari, A., Eyre, D. W., Gallardo-Pizarro, A., ... & Guerrero-López, A., on behalf of ESGAID and EAAS. (2026). How ready are we to use artificial intelligence in our fight against antimicrobial resistance? An ESGAID and EAAS perspective. Expert Review of Anti-infective Therapy, 24(1), 39–61. https://doi.org/10.1080/14787210.2026.2625382

Transformer Vibration Forecasting for Advancing Rail Safety and Maintenance 4.0

Published in IEEE Open Journal of Intelligent Transportation Systems, 2025

Recommended citation: Larese, D. C., Cerrada, A. B., Tomei, G. D., Guerrero-López, A., Olmos, P. M., & Gómez García, M. J. (2025). Transformer Vibration Forecasting for Advancing Rail Safety and Maintenance 4.0. IEEE Open Journal of Intelligent Transportation Systems, 6, 1612–1624. https://doi.org/10.1109/OJITS.2025.3638611

ESCMID workshop: Artificial intelligence and machine learning in medical microbiology diagnostics

Published in Microbes and Infection, 2025

Recommended citation: Greutmann, M., Borgwardt, K., Brüningk, S., Franzeck, F., Giske, C. G., Green, A. G., ... & Egli, A. (2025). ESCMID workshop: Artificial Intelligence and Machine Learning in Medical Microbiology Diagnostics. Microbes and Infection, 105562. https://doi.org/10.1016/j.micinf.2025.105562

CT-SCOPE: annotated dataset of CT SCans for the automatic semantic segmentation of the Osseous structures of the Paranasal sinusEs

Published in Data in Brief, 2025

Recommended citation: Sun, Y., Guerrero-López, A., Arias-Londoño, J. D., & Godino-Llorente, J. I. (2025). CT-SCOPE: annotated dataset of CT SCans for the automatic semantic segmentation of the Osseous structures of the Paranasal sinusEs. Data in Brief, 111962. https://doi.org/10.1016/j.dib.2025.111962

Bayesian automatic screening of pneumonia and lung lesions localization from CT scans. A combined method toward a more user-centred and explainable approach

Published in IEEE Access, 2025

Recommended citation: Moure Prado, Á., Guerrero-López, A., Arias-Londoño, J. D., & Godino-Llorente, J. I. (2025). Bayesian automatic screening of pneumonia and lung lesions localization from CT scans. A combined method toward a more user-centred and explainable approach. IEEE Access, 13, 3607282. https://doi.org/10.1109/ACCESS.2025.3607282

Automated web-based typing of Clostridioides difficile ribotypes via MALDI-TOF MS

Published in BMC Bioinformatics, 2025

A web-based translational tool for automated Clostridioides difficile ribotype typing from MALDI-TOF MS data.

Recommended citation: Blázquez-Sánchez, M.*, Guerrero-López, A.*, Candela, A., Belenguer-Llorens, A., Moreno, J. M., Sevilla-Salcedo, C., ... & Rodríguez-Sánchez, B. (2025). Automated web-based typing of Clostridioides difficile ribotypes via MALDI-TOF MS. BMC Bioinformatics, 26(1), 181. https://doi.org/10.1186/s12859-025-06200-6

Automatic semantic segmentation of the osseous structures of the paranasal sinuses

Published in Computerized Medical Imaging and Graphics, 2025

Medical image segmentation of paranasal sinus osseous structures for clinically relevant CT analysis.

Recommended citation: Sun, Y., Guerrero-López, A., Arias-Londoño, J. D., & Godino-Llorente, J. I. (2025). Automatic semantic segmentation of the osseous structures of the paranasal sinuses. Computerized Medical Imaging and Graphics, 123, 102541. https://doi.org/10.1016/j.compmedimag.2025.102541

NeuroVoz: a Castillian Spanish corpus of parkinsonian speech

Published in Scientific Data, 2024

Recommended citation: Mendes-Laureano, J., Gómez-García, J. A., Guerrero-López, A., et al. (2024). NeuroVoz: a Castillian Spanish corpus of parkinsonian speech. Scientific Data, 11, 1367. https://doi.org/10.1038/s41597-024-04186-z

A voice and speech corpus of patients who underwent upper airway surgery in pre- and post-operative states

Published in Scientific Data, 2024

Recommended citation: Hernández-García, E., Guerrero-López, A., Arias-Londoño, J. D., et al. (2024). A voice and speech corpus of patients who underwent upper airway surgery in pre- and post-operative states. Scientific Data, 11, 746. https://doi.org/10.1038/s41597-024-03540-5

Exploring the Power of Photoplethysmogram Matrix for Atrial Fibrillation Detection with Integrated Explainability

Published in Engineering Applications of Artificial Intelligence, 2024

Explainable deep learning for atrial fibrillation detection from PPG-derived matrix representations.

Recommended citation: Fuster-Barceló, C., Guerrero-López, A., Camara, C., & Peris-Lopez, P. (2024). Exploring the Power of PPG Matrix for Atrial Fibrillation Detection with Integrated Explainability. Engineering Applications of Artificial Intelligence, 133, 108325. https://doi.org/10.1016/j.engappai.2024.108325

Detecting train driveshaft damages using accelerometer signals and Differential Convolutional Neural Networks

Published in Engineering Applications of Artificial Intelligence, 2023

Recommended citation: López, A., Guerrero-López, A., Olmos, P. M., & Gómez, M. J. (2023). Detecting train driveshaft damages using accelerometer signals and Differential Convolutional Neural Networks. Engineering Applications of Artificial Intelligence, 126, 106840. https://doi.org/10.1016/j.engappai.2023.106840

Automatic Discrimination of Species within the Enterobacter cloacae Complex Using Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry and Supervised Algorithms

Published in Journal of Clinical Microbiology, 2023

Supervised learning for species-level discrimination within the Enterobacter cloacae complex using routine MALDI-TOF measurements.

Recommended citation: Candela, A.*, Guerrero-López, A.*, Mateos, M., Gómez-Asenjo, A., Arroyo, M. J., Hernández-García, M., del Campo, R., Cercenado, E., Cuénod, A., Méndez, G., Mancera, L., Caballero, J. D., Martínez-García, L., Gijón, D., Morosini, M. I., Ruiz-Garbajosa, P., Egli, A., Cantón, R., Muñoz, P., Rodríguez-Temporal, D., & Rodríguez-Sánchez, B. (2023). Automatic Discrimination of Species within the Enterobacter cloacae Complex Using Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry and Supervised Algorithms. Journal of Clinical Microbiology, e01049-22. https://journals.asm.org/doi/abs/10.1128/jcm.01049-22

Automatic antibiotic resistance prediction in Klebsiella pneumoniae based on MALDI-TOF mass spectra

Published in Engineering Applications of Artificial Intelligence, 2023

Machine learning for rapid antibiotic-resistance prediction in Klebsiella pneumoniae directly from routine MALDI-TOF mass spectra.

Recommended citation: Guerrero-López, A., Sevilla-Salcedo, C., Candela, A., Hernández-García, M., Cercenado, E., Olmos, P. M., Cantón, R., Muñoz, P., Gómez-Verdejo, V., del Campo, R., & Rodríguez-Sánchez, B. (2023). Automatic antibiotic resistance prediction in Klebsiella pneumoniae based on MALDI-TOF mass spectra. Engineering Applications of Artificial Intelligence, 118, 105644. https://www.sciencedirect.com/science/article/pii/S0952197622006340

Bayesian Sparse Factor Analysis with Kernelized Observations

Published in Neurocomputing, 2022

Recommended citation: Sevilla-Salcedo, C., Guerrero-López, A., Olmos, P. M., & Gómez-Verdejo, V. (2022). Bayesian Sparse Factor Analysis with Kernelized Observations. Neurocomputing. https://doi.org/10.1016/j.neucom.2022.03.024

Evaluation of a VR system for Pain Management using binaural acoustic stimulation

Published in Multimedia Tools and Applications, 78, 2019

Recommended citation: Perales, F. J., Riera, L., Ramis, S., Guerrero-López, A. (2019). Evaluation of a VR system for Pain Management using binaural acoustic stimulation. Multimed Tools Appl, 78, 32869–32890. https://link.springer.com/article/10.1007/s11042-019-07953-y

MALDI-ST: A deep learning-based framework for rapid bacterial strain typing using MALDI-TOF mass spectra

Published in medRxiv, 2026

A deep learning framework for rapid MALDI-TOF-based strain typing across four clinically important bacterial species, including external validation and interpretable spectral signatures.

Recommended citation: Nguyen, H.-A., Peleg, A. Y., Song, J., Vezina, B., Egli, A., Guerrero-López, A., Blakeway, L. V., Wisniewski, J. A., Badoordeen, G. Z., Theegala, R., Doan, N. Q., Dowe, D. L., & Macesic, N. (2026). MALDI-ST: A deep learning-based framework for rapid bacterial strain typing using MALDI-TOF mass spectra. medRxiv. https://doi.org/10.64898/2026.08.08.26359928

Development and validation of a LAMP assay for rapid detection of Escherichia coli associated UTIs with increased risk of urosepsis

Published in Research Square, 2026

A rapid LAMP-based assay for detecting Escherichia coli and the urosepsis-associated papGII virulence factor directly from urine specimens.

Recommended citation: Rogenmoser, J., Guerrero-López, A., Nolte, O., Quiblier, C., Hinic, V., Kolesnik-Goldmann, N., Biggel, M., & Egli, A. (2026). Development and validation of a LAMP assay for rapid detection of Escherichia coli associated UTIs with increased risk of urosepsis. Research Square. https://doi.org/10.21203/rs.3.rs-9836245/v1

Automatic surveillance of Escherichia coli bacteriological strains within clinical settings

Published in bioRxiv, 2024

A machine learning approach for automated strain surveillance of Escherichia coli in clinical settings.

Recommended citation: Rodríguez Palomo, R., Guerrero-López, A., Sevilla-Salcedo, C., Rodríguez-Temporal, D., Rodríguez-Sánchez, B., & Gómez-Verdejo, V. (2024). Automatic surveillance of Escherichia coli bacteriological strains within clinical settings. bioRxiv. https://doi.org/10.1101/2024.11.05.622049

Overcoming variability challenges for Clostridioides difficile via data augmentation techniques

Published in bioRxiv, 2024

Recommended citation: Guerrero-López, A., Antón, L. B., Blázquez-Sánchez, M., Schmidt-Santiago, L., Sevilla-Salcedo, C., Rodríguez-Temporal, D., Rodríguez-Sánchez, B., & Gómez-Verdejo, V. (2024). Overcoming variability challenges for Clostridioides difficile via data augmentation techniques. bioRxiv. https://doi.org/10.1101/2024.10.29.620907

Multi-view hierarchical Variational AutoEncoders with Factor Analysis latent space

Published in arXiv, 2022

Recommended citation: Guerrero-López, A., Sevilla-Salcedo, C., Gómez-Verdejo, V., & Olmos, P. M. (2022). Multi-view hierarchical Variational AutoEncoders with Factor Analysis latent space. arXiv. https://arxiv.org/abs/2207.09185

Interacción basada en robots sociales para la evaluación de expresiones faciales

Published in Interaccion 2019 at San Sebastián, Spain., 2019

Recommended citation: Ramis, S., Perales, F., Guerrero-López, A., & Buades Rubio, J. M. (2019). Interacción basada en robots sociales para la evaluación de expresiones faciales. https://www.researchgate.net/publication/334204484_Interaccion_basada_en_robots_sociales_para_la_evaluacion_de_expresiones_faciales

MARISMa: a routine MALDI-TOF MS database from 2018 to 2024

Published in Zenodo, 2025

Recommended citation: Santiago, L. S., López-Mareca, I., Blázquez-Sánchez, M., Moreno, J. M., Sevilla-Salcedo, C., Gómez-Verdejo, V., Rodríguez-Sánchez, B., Rodríguez-Temporal, D., & Guerrero-López, A. (2025). MARISMa: a routine MALDI-TOF MS database from 2018 to 2024. Zenodo. https://zenodo.org/records/14218003

A voice and speech corpus of patients who underwent upper airway surgery in pre- and post-operative states

Published in Zenodo, 2024

Recommended citation: Hernández-García, E., Guerrero-López, A., Arias-Londoño, J. D., et al. (2024). CUCO Database: A voice and speech corpus of patients who underwent upper airway surgery in pre- and post-operative states [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10256802

NeuroVoz: a Castillian Spanish corpus of parkinsonian speech

Published in Zenodo, 2024

An open Castilian Spanish speech corpus designed to support Parkinson-related speech analysis and digital biomarker research.

Recommended citation: Mendes-Laureano, J., Gómez-García, J. A., Guerrero-López, A., Luque-Buzo, E., Arias-Londoño, J. D., Grandas-Pérez, F. J., & Godino-Llorente, J. I. (2024). NeuroVoz: a Castillian Spanish corpus of parkinsonian speech (1.0.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10777657

MALDI-TOF spectra of Clostridioides difficile Ribotypes

Published in Zenodo, 2023

Recommended citation: Blázquez-Sánchez, M., Guerrero-López, A., Candela, A., Sánchez-Cueto, M., Marín, M., Jiménez-Navarro, L., et al. (2023). MALDI-TOF spectra of Clostridioides difficile Ribotypes. Zenodo. https://doi.org/10.5281/zenodo.10370872

Clinical Microbiology with Multi-view deep probabilistic models

Published in Universidad Carlos III de Madrid, 2023

Recommended citation: Guerrero-López, A. J. (2023). Clinical microbiology with multi-view deep probabilistic models. http://aguerrerolopez.github.io/files/Tesis_GuerreroLopez_AlejandroJorge_FormatoWeb.pdf